Week 3

Alignment link

• alignment example:
• https://bioboot.github.io/bimm143_W20/class-material/nw/

E coli metadata activity

• colab notebook: https://colab.research.google.com/drive/1X18-sF7Spht9ZXZlDkY2S_zvgEEf4xJG?usp=sharing
• metadata 1: https://drive.google.com/file/d/1BB7M3eWo8zPuxmlwSKMzE_RBeYrjv1n0/view?usp=sharing
• metadata 2: https://drive.google.com/file/d/18_PkR_sOLsQshSM4O1n2hVOcZoxgn8E0/view?usp=sharing
• metadata 3: https://drive.google.com/file/d/1_cJGV1gwHXzgUe7DMwHVI28nhJcma2tt/view?usp=sharing

Link to data processing reading

• original paper: https://pmc.ncbi.nlm.nih.gov/articles/PMC9948711/
• review on gene expression compendia: https://pmc.ncbi.nlm.nih.gov/articles/PMC9396250/

Notes on reading scientific paper

• from a previous Biological Data Science course at JAX
• colab notebok: https://drive.google.com/file/d/1V7MIeRD7Lp8a2hEwKD_qLd67Vk2mSc24/view?usp=sharing
• Link to the slides

Khan Academy on the Central Dogma of Meluclar Biology

• from AP biology course
• https://www.khanacademy.org/science/ap-biology/gene-expression-and-regulation/translation/a/intro-to-gene-expression-central-dogma
• chapters on gene expression, the genetic code, translation and more