Week 4

• link to gene sequence “seqA”

• second notebook introducing data

• gene annotation data: presense/absence table for strains

• raw transcription data: quasi-alignments counts from Salmon

• column-wise normalized transcription data: TPM stands for ‘transcripts per million’, normalizes for different total read numbers per sample

• scaled and filtered transcription data: filtered and normalized as in the paper, but for e coli