ML Model Interpretation

While strides have been made toward increasingly audited machine learning models, it remains unknown if the model-interpretation and model-explanation algorithms developed for image processing and other domains will prove successful when used on biological data. We are testing the application of common xAI methods on compendia of micobial gene expression data, including assessing models I begun experimentally validating in the Hogan Lab (Tan and Doing et al 2018) and building new compendia (Doing et al 2023).

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